A group of off-duty soldiers are recruited to escort an Army Intelligence Officer to investigate a Cobra Industries facility and get more than they bargained for.

The Joes track an escaped Cobra bio-viper into a near by town and must eliminate it while also being hunted by the military for a crime they didn’t commit.

Tunnel Rat is kidnapped by Scrap-Iron and forced to test a brainwave-controlled weaponized exo-suit; in order to rescue him, Roadblock allows himself to be taken as well.

Zartan and his motorcycle gang terrorize a small town and it’s up to the Joes to put a stop to them.

Major Bludd, a mercenary hired by the Baroness, tracks down a target for assassination; luckily the Joes are on hand to run interference.

The Joes take refuge at Snake Eyes’ dojo and as they train they discover insight into Snake Eyes’ checkered past with Storm Shadow.

After Storm Shadow ambushes the Joes and kidnaps Jinx, the team must regroup and hunt down their attacker.

While buying parts for the Coyote, Duke is arrested and taken to prison; the rest of the Joes must break him out before Flint and Lady Jaye track him down.

With the help of an inside source, the Joes infiltrate a Cobra stronghold where Mindbender and McCullen work together to produce the ultimate exo-armor weapon.

The Joes locate a bio-viper manufacturing facility and are met with resistance from Firefly, a Cobra saboteur who threatens to burn the surrounding town to the ground.

When Cobra targets his family, Duke heads home to protect them while the rest of the team infiltrates Cobra’s Christmas party.

As Flint and Lady Jaye transport the Joes into custody via train, Baroness moves to intercept them to regain control of the drive that holds Cobra’s secrets.

On a mission to capture Mindbender, the Joes become entranced and are trapped in a cult-like commune run by the eerily charismatic twin brothers Tomax and Xamot.

Flint and Lady Jaye use Zartan to track the Joes, who in turn track the Baroness while transporting a high-tech camouflage suit to Cobra Commander.

The Joes head to Canada to hide out with a less than welcoming Snow Job, and are unknowingly followed by Storm Shadow and the prototype Shadow-Vipers.

The Joes enlist the help of sea captain Shipwreck to help them transport a canister of evidence abducted from a Cobra lab; unfortunately the trip is anything but smooth sailing.

Investigating Cobra’s “BioDag” delivery system, the Joes travel to Scotland where they become trapped inside Destro’s castle! A game of cat and mouse ensues as the Joes search for an escape from the deadly mansion.

The Joes crash a communications summit at The Baroness’s Eastern European chateau and discover that they’re not the only ones with a grudge against Cobra.

The Joes investigate a missing scientist at a Cobra lab and discover a Cobra’s plot to release a highly contagious virus into the population.

The Joes raid a Cobra medical facility looking for information on the alleged inhumane experimentations being conducted as well as a mysterious “Patient X”.

Investigating a missing kid from Tunnel Rat’s old neighborhood, the Joes head to Brooklyn, where they discover an urban legend about a monster in the sewers may in fact be true.

While infiltrating Cobra Tower in New York, Scarlett and Snake Eyes uncover a plot by a mysterious ninja who attempts to take down Cobra Commander.

Heavy Duty is recruited by Flint to help bring in his cousin Roadblock; unfortunately for both men and the Joes, Major Bludd is seeking vengeance for the scars received in their last encounter.

Investigating a series of mysterious earthquakes, the Joes head underground and discover an elaborate network of tunnels being constructed by Cobra to connect their multiple strongholds across the country.